Mecklenburg, C. W., A. Lynghammar, E. Johannesen, I. Byrkjedal. J. S. Christiansen, A. V. Dolgov, O. V. Karamushko, T. A. Mecklenburg, P. R. Møller, D. Steinke, and R. M. Wienerroither. 2018. Marine Fishes of the Arctic Region. Conservation of Arctic Flora and Fauna, Akureyri, Iceland. 740 pages in 2 volumes, ISBN 978-9935-431-69-1 and ISBN 978-9935-431-70-7.
Stevenson, D. E., C. W. Mecklenburg, and Y. Kai. 2017. Taxonomic clarification of the Eumicrotremus asperrimus species complex (Teleostei: Cyclopteridae) in the eastern North Pacific. Zootaxa 4294 (4): 419–435
Mecklenburg, C. W., T. A. Mecklenburg, B. A. Sheiko, and D. Steinke. 2016. Pacific Arctic marine fishes. Conservation of Arctic Flora and Fauna, Akureyri, Iceland. 398 pp. ISBN: 978-9935-431-55-4.
Mecklenburg, C. W., and D. Steinke. 2015. Ichthyofaunal baselines in the Pacific Arctic region and RUSALCA study area. Oceanography 28(3): 158–189, http://dx.doi.org/10.5670/oceanog.2015.64.
Mecklenburg, C. W., and M. E. Anderson. 2015. Reassessment of multiple species of Gymnelus (Teleostei: Zoarcidae) in Pacific Arctic and boreal regions. Zootaxa 3948(2): 263–288.
Mecklenburg, C. W., I. Byrkjedal, O. V. Karamushko, and P. R. Møller. 2014. Atlantic fishes in the Chukchi Borderland. Marine Biodiversity 44: 127-150.
Christiansen, J. S., C. W. Mecklenburg, and O. V. Karamushko. 2013. Arctic marine fishes and their fisheries in light of global change. Global Change Biology 20(2): 352-359.
Lynghammar, A., J. S. Christiansen, C. W. Mecklenburg, O. V. Karamushko, P. R. Møller, and V. F. Gallucci. 2013. Species richness and distribution of chondrichthyan fishes in the Arctic Ocean and adjacent seas. Biodiversity 14: 57-66.
Mecklenburg, C. W., P. R. Møller, and D. Steinke. 2011. Biodiversity of arctic marine fishes: taxonomy and zoogeography. Marine Biodiversity 41(1):109–140. Includes electronic supplementary material (Online Resources 1–5), downloadable online by Marine Biodiversity subscribers, or may be obtained from ptstephens@alaskan.com.
Mecklenburg, C. W., and T. A. Mecklenburg. October 2010. Taxonomy and zoogeography of Arctic marine fishes and detection of change. RUSALCA 2009 Postcruise Workshop, Tivat, Serbia and Montenegro. Download at: http://www.pmel.noaa.gov/rusalca/sites/default/files/atoms/files/MecklenburgRUSALCArev17Feb2011.pdf
Mecklenburg, C. W., D. L. Stein, B. A. Sheiko, N. V. Chernova, T. A. Mecklenburg, and B. A. Holladay. 2007. Russian-American Long-term Census of the Arctic: Benthic fishes trawled in the Chukchi Sea and Bering Strait, August 2004. Northwestern Naturalist 88: 168-187.
Gharrett, A. J., C. W. Mecklenburg, L. W. Seeb, Z. Li, A. P. Matala, A. K. Gray, and J. Heifetz. 2006. Coloration and morphological comparisons of genetically distinct rougheye rockfish sibling species. Trans. Am. Fish. Soc. 135: 791-800.
Love, M., C. W. Mecklenburg, T. A. Mecklenburg, and L. K. Thorsteinson. 2005. Resource inventory of marine and estuarine fishes of the West Coast and Alaska. OCS Study MMS 2005-030 and USGS/NBII 2005-001. 288 pp.
Mecklenburg, C. W., and B. A. Sheiko. 2004. Family Stichaeidae Gill 1864 - pricklebacks. Calif. Acad. Sci. Annotated Checklists of Fishes No. 26. 28 pp.
Sheiko, B. A., and C. W. Mecklenburg. 2004. Family Agonidae Swainson 1839 - poachers. Calif. Acad. Sci. Annotated Checklists of Fishes No. 27. 24 pp.
Mecklenburg, C. W. 2003. Calif. Acad. Sci. Annotated Checklists of Fishes:
Mecklenburg, C. W., and W. N. Eschmeyer. 2003. Family Hexagrammidae Gill 1889 - greenlings. Calif. Acad. Sci. Annotated Checklists of Fishes No. 3. 10 pp.
Mecklenburg, C. W., and B. A. Sheiko. 2003. Family Cyclopteridae Bonaparte 1831 - lumpsuckers. Calif. Acad. Sci. Annotated Checklists of Fishes No. 6. 17 pp.
Mecklenburg, C. W., T. A. Mecklenburg, and L. K. Thorsteinson. 2002. Fishes of Alaska. American Fisheries Society, Bethesda, Maryland. xxxvii + 1,037 pp. + 40 plates.